| A+up High SchoolHighA+ Unlimited Potential | 9–10 | 47 | 15.7 | Not reported |
| Aristoi Classical Academy-CypressElementaryMiddleHighAristoi Classical Academy | K–9 | 511 | 16.0 | Not reported |
| Beta AcademyMiddleHigh | 6–12 | 537 | 23.3 | Not reported |
| Early College T-STEM AcademyHighRaul Yzaguirre Schools for Success | 9–12 | 303 | 14.4 | Not reported |
| Energized for STEM Academy High SchoolHighHouston ISD | 9–12 | 520 | 28.9 | Not reported |
| Excel Academy Education Transition CenterHighExcel Academy | 9–11 | 58 | 11.6 | Not reported |
| George I Sanchez CharterElementaryMiddleHigh | Pre-K–12 | 726 | 21.4 | Not reported |
| George I Sanchez NorthElementaryMiddleHighGeorge I Sanchez Charter | Pre-K–12 | 394 | 19.7 | Not reported |
| Harmony School of Advancement-HoustonHighHarmony Public Schools - Houston North | 9–12 | 752 | 17.1 | Not reported |
| Harmony School of Discovery - HoustonMiddleHighHarmony Public Schools - Houston North | 6–12 | 858 | 15.9 | Not reported |
| Harmony School of Ingenuity-HoustonMiddleHighHarmony Public Schools - Houston South | 6–12 | 727 | 15.5 | Not reported |
| Harmony Science Academy-HoustonHighHarmony Public Schools - Houston South | 9–12 | 750 | 16.0 | Not reported |
| Harmony Virtual AcademyElementaryMiddleHighVirtualHarmony Public Schools - Houston South | K–12 | 260 | 14.4 | Virtual |
| Harris County Juvenile Detention CenterElementaryMiddleHighExcel Academy | 4–12 | 165 | 11.8 | Not reported |
| Houston Gateway Academy - Coral CampusElementaryMiddleHighHouston Gateway Academy INC | Pre-K–12 | 961 | 24.6 | Not reported |
| Houston Heights Charter SchoolHighHouston Heights High School | 9–12 | 192 | 11.3 | Not reported |
| IDEA Hardy College PreparatoryMiddleHighIDEA Public Schools | 6–10 | 635 | 18.1 | Not reported |
| IDEA Lake Houston College PreparatoryMiddleHighIDEA Public Schools | 6–9 | 499 | 19.2 | Not reported |
| IDEA Spears College PreparatoryMiddleHighIDEA Public Schools | 6–10 | 617 | 20.6 | Not reported |
| Ignite Community School - FallbrookElementaryMiddleHighTexas College Preparatory Academies | K–11 | 208 | 16.0 | Not reported |
| ILTEXAS Houston Windmill Lakes Orem High SchoolHighInternational Leadership of Texas (ILTEXAS) | 9–12 | 837 | 15.5 | Not reported |
| Ischool High - AtascocitaHighTexas College Preparatory Academies | 9–12 | 148 | 24.7 | Not reported |
| Ischool High at University ParkMiddleHighTexas College Preparatory Academies | 6–12 | 433 | 24.1 | Not reported |
| Ki Charter - KingwoodElementaryMiddleHighKi Charter | 3–12 | 21 | 10.5 | Not reported |
| KIPP Connect PreparatoryMiddleHighKIPP Texas Public Schools | 6–12 | 979 | 20.4 | Not reported |
| KIPP East End High SchoolHighKIPP Texas Public Schools | 9–12 | 625 | 16.9 | Not reported |
| KIPP Generations CollegiateHighKIPP Texas Public Schools | 9–12 | 614 | 15.7 | Not reported |
| KIPP Houston High SchoolHighKIPP Texas Public Schools | 9–12 | 642 | 18.3 | Not reported |
| KIPP Mosaic Academy SchoolMiddleHighKIPP Texas Public Schools | 6–10 | 788 | 22.5 | Not reported |
| KIPP Northeast College PreparatoryHighKIPP Texas Public Schools | 9–12 | 614 | 17.1 | Not reported |
| KIPP Sharpstown College PrepMiddleHighKIPP Texas Public Schools | 6–11 | 789 | 21.9 | Not reported |
| KIPP Sunnyside High SchoolHighKIPP Texas Public Schools | 9–12 | 622 | 17.3 | Not reported |
| Mount Carmel AcademyHighHouston ISD | 9–12 | 194 | 32.3 | Not reported |
| Phoenix School at Southwest SchoolsElementaryMiddleHighSouthwest Public Schools | 5–12 | 107 | — | Not reported |
| Premier High School - Houston - HobbyHighPremier High Schools | 9–12 | 97 | 24.2 | Not reported |
| Premier High School - Houston (greenspoint)HighPremier High Schools | 9–12 | 60 | 20.0 | Not reported |
| Premier High School - Houston (sharpstown)HighPremier High Schools | 9–12 | 91 | 45.5 | Not reported |
| Premier High School Houston Gallery NorthHighPremier High Schools | 9–12 | 108 | 21.6 | Not reported |
| Premier High School-Houston (champions)HighPremier High Schools | 9–12 | 109 | 18.2 | Not reported |
| Richard Milburn Academy Houston (suburban)HighRichard Milburn Alter High School (killeen) | 9–12 | 157 | 31.4 | Not reported |
| Ser-Ninos Charter HighHighSer-Ninos Charter School | 9–11 | 169 | 13.0 | Not reported |
| Southwest Public Schools College &career Prep AcademyHighSouthwest Public Schools | 9–12 | 462 | — | Not reported |
| Sst ChampionsElementaryMiddleHighSchool of Science and Technology | Pre-K–12 | 1,660 | 16.9 | Not reported |
| Texans Can Academy - Houston NorthHighTexans Can Academies | 9–12 | 254 | 42.3 | Not reported |
| Texans Can Academy - Houston SouthwestHighTexans Can Academies | 9–12 | 410 | 29.3 | Not reported |
| Texas Connections Academy at HoustonElementaryMiddleHighVirtualHouston ISD | 3–12 | 8,641 | 31.0 | Virtual |
| Texasworks - Houston-ChampionsHighTexas Works | 9–12 | 12 | 12.0 | Not reported |
| Texasworks - Houston-Gallery FurnitureHighTexas Works | 9–12 | 17 | — | Not reported |
| Texasworks - Houston-HobbyHighTexas Works | 9–12 | 5 | 5.0 | Not reported |
| The Pro-Vision AcademyHigh | 9–12 | 212 | 21.2 | Not reported |
| Westchester Academy for International StudiesMiddleHighSpring Branch ISD | 6–12 | 864 | 13.9 | Not reported |
| Yellowstone College PreparatoryMiddleHigh | 6–10 | 321 | 15.3 | Not reported |
| YES Prep - 5th WardMiddleHighYES Prep Public Schools INC | 6–12 | 933 | 15.8 | Not reported |
| YES Prep - Brays OaksMiddleHighYES Prep Public Schools INC | 6–12 | 1,051 | 18.1 | Not reported |
| YES Prep - East EndMiddleHighYES Prep Public Schools INC | 6–12 | 1,014 | 15.8 | Not reported |
| YES Prep - GulftonMiddleHighYES Prep Public Schools INC | 6–12 | 1,039 | 17.0 | Not reported |
| YES Prep - HobbyMiddleHighYES Prep Public Schools INC | 6–11 | 685 | 16.3 | Not reported |
| YES Prep - North CentralMiddleHighYES Prep Public Schools INC | 6–12 | 1,002 | 17.3 | Not reported |
| YES Prep - NorthlineMiddleHighYES Prep Public Schools INC | 6–12 | 1,004 | 17.0 | Not reported |
| YES Prep - NorthsideMiddleHighYES Prep Public Schools INC | 6–12 | 948 | 16.1 | Not reported |
| YES Prep - NorthwestMiddleHighYES Prep Public Schools INC | 6–12 | 940 | 15.4 | Not reported |
| YES Prep - SoutheastMiddleHighYES Prep Public Schools INC | 6–12 | 854 | 15.5 | Not reported |
| YES Prep - SouthsideMiddleHighYES Prep Public Schools INC | 6–12 | 860 | 15.1 | Not reported |
| YES Prep - SouthwestMiddleHighYES Prep Public Schools INC | 6–12 | 1,060 | 18.6 | Not reported |
| YES Prep - WestMiddleHighYES Prep Public Schools INC | 6–12 | 990 | 16.5 | Not reported |
| YES Prep - White OakMiddleHighYES Prep Public Schools INC | 6–12 | 942 | 17.1 | Not reported |
| YES Prep North ForestMiddleHighYES Prep Public Schools INC | 6–12 | 991 | 16.2 | Not reported |