| Academia Cesar Chavez ElementaryElementaryAcademias La Paz | Pre-K–5 | 336 | — | In person |
| Academia Cesar Chavez Middle SchoolMiddleAcademias La Paz | 6–8 | 149 | — | In person |
| Achieve Language AcademyElementaryMiddle | Pre-K–8 | 451 | 13.3 | In person |
| Avalon Middle SchoolMiddleAvalon School | 6–8 | 75 | 10.7 | Supplemental virtual |
| Avalon SchoolHigh | 9–12 | 182 | 10.7 | Supplemental virtual |
| Career PathwaysMiddleHigh | 6–12 | 121 | 12.1 | In person |
| City AcademyHigh | 9–12 | 135 | 19.3 | In person |
| City Academy OnlineHighCity Academy | 9–12 | 0 | — | In person |
| Community of Peace Academy ElemElementaryCommunity of Peace Academy | Pre-K–4 | 326 | 12.1 | In person |
| Community of Peace Academy High SchHighCommunity of Peace Academy | 9–12 | 250 | 15.6 | In person |
| Community of Peace Academy MiddleElementaryMiddleCommunity of Peace Academy | 5–8 | 279 | 13.3 | In person |
| Community School of Excellence - MSElementaryMiddleCommunity School of Excellence | 5–8 | 560 | — | In person |
| Community School of Excellence ElemElementaryCommunity School of Excellence | Pre-K–4 | 696 | 10.5 | In person |
| Community School of Excellence HighHighCommunity School of Excellence | 9–12 | 199 | 19.9 | In person |
| Cornerstone Montessori ElementaryElementaryMiddle | K–6 | 132 | 13.2 | In person |
| Cse - Oll 6-8MiddleCommunity School of Excellence | 6–8 | 0 | — | In person |
| Cse - Oll Ec-5ElementaryCommunity School of Excellence | Pre-K–5 | 0 | — | In person |
| Cse - Oll HSHighCommunity School of Excellence | 9–12 | 0 | — | In person |
| Face to Face AcademyHigh | 9–12 | 83 | 11.9 | In person |
| Face to Face Academy OnlineHighVirtualFace to Face Academy | 9–12 | 12 | — | Virtual with in-person options |
| Great River Elementary SchoolElementaryMiddleGreat River School | 1–6 | 383 | 22.5 | In person |
| Great River SchoolMiddleHigh | 7–12 | 411 | 11.7 | In person |
| HGA ElementaryElementaryHigher Ground Academy | K–5 | 525 | 18.1 | In person |
| HGA Junior HighMiddleHigher Ground Academy | 6–7 | 196 | 98.0 | In person |
| HGA SecondaryMiddleHighHigher Ground Academy | 8–12 | 442 | 13.4 | In person |
| High School for Recording ArtsHigh | 9–12 | 181 | 16.5 | In person |
| Hmong College Prep Academy ESElementaryHmong College Prep Academy | K–5 | 988 | 11.0 | In person |
| Hmong College Prep Academy HSHighHmong College Prep Academy | 9–12 | 791 | 16.8 | In person |
| Hmong College Prep Academy MSMiddleHmong College Prep Academy | 6–8 | 724 | 18.1 | In person |
| HOPE Community Academy ElementaryElementaryHope Community Academy | K–5 | 434 | 8.5 | In person |
| HOPE Community Academy High SchoolHighHope Community Academy | 9–12 | 124 | 17.7 | In person |
| HOPE Community Academy MiddleMiddleHope Community Academy | 6–8 | 221 | 18.4 | In person |
| HOPEStart Pre-K ProgramHope Community Academy | Pre-K | 20 | — | In person |
| Jennings Community SchoolMiddleHigh | 7–12 | 57 | 11.4 | In person |
| Jennings Online ProgramMiddleHighVirtualJennings Community School | 7–12 | 13 | — | Virtual |
| Laura Jeffrey Academy CharterElementaryMiddle | 5–8 | 117 | 7.3 | In person |
| LIFE PrepElementaryMiddleLife Prep | Pre-K–6 | 134 | 13.4 | In person |
| Metro Deaf SchoolElementaryMiddleHigh | Pre-K–12 | 156 | 6.2 | In person |
| Midway Star AcademyElementaryMiddle | K–8 | 393 | 19.6 | In person |
| Minnesota Connections Academy 7-12MiddleHighVirtualMinnesota Transitions Charter Sch | 7–12 | 3,536 | 41.6 | Virtual |
| Minnesota Connections Academy K-6ElementaryMiddleVirtualMinnesota Transitions Charter Sch | K–6 | 1,017 | 30.8 | Virtual |
| Minnesota Online High SchoolHighVirtual | 9–12 | 254 | 9.8 | Virtual |
| MMSA Elementary SchoolElementaryMinnesota Math and Science Academy | K–5 | 243 | 18.7 | In person |
| MMSA Secondary SchoolMiddleHighMinnesota Math and Science Academy | 6–12 | 327 | 21.8 | In person |
| NCS Online ProgramMiddleHighVirtualNew Century School | 6–12 | 23 | — | Virtual |
| New Century SchoolElementary | Pre-K–5 | 367 | 11.1 | In person |
| New Century School SecondaryMiddleHighNew Century School | 6–12 | 284 | 31.6 | In person |
| Nova Classical Academy Lower SchoolElementaryNova Classical Academy | K–5 | 485 | 14.3 | In person |
| Nova Classical Academy Upper SchoolMiddleHighNova Classical Academy | 6–12 | 556 | 15.4 | In person |
| Online High SchoolHighAvalon School | 9–12 | 18 | — | Supplemental virtual |
| Prodeo Academy St. Paul ElementaryElementaryProdeo Academy | 2–4 | 133 | 9.5 | In person |
| Prodeo Academy St. Paul MiddleElementaryMiddleProdeo Academy | 5–7 | 131 | 10.1 | In person |
| Prodeo Academy St. Paul PrimaryElementaryProdeo Academy | Pre-K–1 | 116 | 10.5 | In person |
| Quantum STEAM Academy ElementaryElementaryQuantum STEAM Academy Charter | Pre-K–4 | 128 | 32.0 | In person |
| Quantum STEAM Academy Middle SchoolElementaryMiddleQuantum STEAM Academy Charter | 5–8 | 72 | 18.0 | In person |
| St Paul Conservatory Performing ArtHigh | 9–12 | 336 | 19.8 | In person |
| St. Paul City High SchoolHighSt. Paul City School | 9–12 | 152 | 15.2 | In person |
| St. Paul City Middle SchoolMiddleSt. Paul City School | 6–8 | 150 | 21.4 | In person |
| St. Paul City Primary SchoolElementarySt. Paul City School | Pre-K–5 | 313 | 14.2 | In person |
| St. Paul Northern Lights SecondaryMiddleSt. Paul School of Northern Lights | 7–8 | 15 | 15.0 | In person |
| St. Paul School of Northern LightsElementaryMiddle | K–6 | 212 | 14.1 | In person |
| STEP Academy Charter SchoolMiddleHighSTEP Academy | 6–12 | 366 | 22.9 | In person |
| STEP Academy ElementaryElementarySTEP Academy | K–5 | 214 | 11.3 | In person |
| The Journey SchoolElementaryMiddle | K–6 | 125 | 20.8 | In person |
| The Journey School MiddleMiddleThe Journey School | 7–8 | 12 | 12.0 | In person |
| Twin Cities AcademyMiddleHigh | 6–12 | 547 | 13.3 | In person |
| Twin Cities German Immersion ChrtrElementaryMiddleTwin Cities German Immersion Chtr | K–8 | 563 | 16.6 | In person |
| Urban AcademyElementaryMiddle | Pre-K–8 | 416 | 12.2 | In person |
| Water Lily MontessoriElementaryMinnesota Wildflower Montessori Sch | Pre-K–K | 3 | 3.0 | In person |